STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY33697.1Sigma 54 interacting domain protein; PFAM: WD domain, G-beta repeat; COGs: COG2319 FOG: WD40 repeat; InterPro IPR001440:IPR019781:IPR019734:IPR001680; KEGG: npu:Npun_F1419 WD-40 repeat-containing protein; PFAM: WD40 repeat, subgroup; Tetratricopeptide TPR-1; SMART: WD40 repeat; Tetratricopeptide repeat; SPTR: WD-40 repeat protein. (1803 aa)    
Predicted Functional Partners:
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
  
 0.990
AFY36281.1
Beta-lactamase domain protein; COGs: COG1236 exonuclease of the beta-lactamase fold involved in RNA processing; InterPro IPR001279; KEGG: npu:Npun_R1387 beta-lactamase domain-containing protein; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like; SPTR: PsoR.
  
 
 0.949
AFY33054.1
Ankyrin; InterPro IPR002110; KEGG: ava:Ava_3104 ankyrin; SMART: Ankyrin repeat; SPTR: Ankyrin.
  
 0.947
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.936
AFY30631.1
Ankyrin; InterPro IPR002110; KEGG: ana:all1426 hypothetical protein; SMART: Ankyrin repeat; SPTR: All1426 protein.
   
 0.930
AFY31457.1
Hypothetical protein; PFAM: Ankyrin repeat; COGs: COG0666 FOG: Ankyrin repeat; InterPro IPR002110; KEGG: npu:Npun_R0083 hypothetical protein; SPTR: Putative uncharacterized protein.
   
 0.930
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.890
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
  0.889
AFY31420.1
Choline dehydrogenase; PFAM: GMC oxidoreductase; COGs: COG2303 Choline dehydrogenase and related flavoprotein; InterPro IPR000172:IPR007867; KEGG: htu:Htur_4961 glucose-methanol-choline oxidoreductase; PFAM: Glucose-methanol-choline oxidoreductase, N-terminal; Glucose-methanol-choline oxidoreductase, C-terminal; PRIAM: Choline dehydrogenase; SPTR: Glucose-methanol-choline oxidoreductase.
    
  0.817
AFY33142.1
PFAM: GMC oxidoreductase; COGs: COG2303 Choline dehydrogenase and related flavoprotein; InterPro IPR003953:IPR000172:IPR007867; KEGG: npu:Npun_F2198 glucose-methanol-choline oxidoreductase; PFAM: Glucose-methanol-choline oxidoreductase, C-terminal; Glucose-methanol-choline oxidoreductase, N-terminal; Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; SPTR: GMC oxidoreductase family.
    
  0.817
Your Current Organism:
Calothrix sp. PCC7507
NCBI taxonomy Id: 99598
Other names: C. sp. PCC 7507, Calothrix sp. PCC 7507
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