Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AFY35344.1 | AFY35345.1 | Cal7507_4993 | Cal7507_4995 | PFAM: Protein of unknown function (DUF820); COGs: COG4636 conserved hypothetical protein; InterPro IPR008538; KEGG: ana:all5020 hypothetical protein; PFAM: Domain of unknown function DUF820; SPTR: Putative uncharacterized protein. | Tetratricopeptide TPR_2 repeat-containing protein; InterPro IPR013105:IPR019734; PFAM: Tetratricopeptide TPR2. | 0.438 |
AFY35345.1 | AFY35344.1 | Cal7507_4995 | Cal7507_4993 | Tetratricopeptide TPR_2 repeat-containing protein; InterPro IPR013105:IPR019734; PFAM: Tetratricopeptide TPR2. | PFAM: Protein of unknown function (DUF820); COGs: COG4636 conserved hypothetical protein; InterPro IPR008538; KEGG: ana:all5020 hypothetical protein; PFAM: Domain of unknown function DUF820; SPTR: Putative uncharacterized protein. | 0.438 |
AFY35345.1 | AFY35346.1 | Cal7507_4995 | Cal7507_4996 | Tetratricopeptide TPR_2 repeat-containing protein; InterPro IPR013105:IPR019734; PFAM: Tetratricopeptide TPR2. | PFAM: Hsp70 protein; COGs: COG0443 Molecular chaperone; InterPro IPR013126; KEGG: nhl:Nhal_2517 heat shock protein 70; PFAM: Heat shock protein 70; SPTR: Heat shock protein 70. | 0.712 |
AFY35346.1 | AFY35345.1 | Cal7507_4996 | Cal7507_4995 | PFAM: Hsp70 protein; COGs: COG0443 Molecular chaperone; InterPro IPR013126; KEGG: nhl:Nhal_2517 heat shock protein 70; PFAM: Heat shock protein 70; SPTR: Heat shock protein 70. | Tetratricopeptide TPR_2 repeat-containing protein; InterPro IPR013105:IPR019734; PFAM: Tetratricopeptide TPR2. | 0.712 |