STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEV83370.1DNA-binding transcriptional regulator, XRE-family HTH domain. (195 aa)    
Predicted Functional Partners:
SEW31313.1
DNA-binding transcriptional regulator, XRE-family HTH domain.
  
     0.733
cinA
Nicotinamide-nucleotide amidase; Belongs to the CinA family.
    
 0.579
SEW20213.1
DNA-binding transcriptional regulator, XRE-family HTH domain.
  
     0.537
SEV94879.1
Two-component system, chemotaxis family, response regulator CheY.
    
  0.509
SEW34661.1
Transcriptional regulator, contains XRE-family HTH domain.
  
     0.498
SEW08530.1
Serine/threonine-protein kinase HipA.
  
 
 0.482
SEV83380.1
Predicted arabinose efflux permease, MFS family.
       0.476
SEV83357.1
LacI family transcriptional regulator.
       0.460
SEW35819.1
FtsX-like permease family protein.
  
     0.444
nadE
NAD+ synthase (glutamine-hydrolysing); Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
    
  0.441
Your Current Organism:
Clostridium fimetarium
NCBI taxonomy Id: 99656
Other names: CIP 105360, DSM 9179, [. fimetarium, [Clostridium] fimetarium, strain Z-2189
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