STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEV84779.1Protein of unknown function. (496 aa)    
Predicted Functional Partners:
SEV84787.1
Nitrogen regulatory protein PII.
 
     0.949
SEV84766.1
Protein of unknown function.
       0.723
SEW33055.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
 
  0.688
SEV87384.1
ATP-dependent DNA helicase RecQ.
  
  
 0.430
SEV84753.1
Hypothetical protein.
       0.425
SEV84803.1
Hypothetical protein.
       0.421
SEW34337.1
Tocopherol cyclase.
  
     0.418
SEW24767.1
Prephenate dehydrogenase.
  
    0.417
whiA
Hypothetical protein; Involved in cell division and chromosome segregation.
   
    0.404
SEW18430.1
Flavodoxin.
  
     0.402
Your Current Organism:
Clostridium fimetarium
NCBI taxonomy Id: 99656
Other names: CIP 105360, DSM 9179, [. fimetarium, [Clostridium] fimetarium, strain Z-2189
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