Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEV82012.1 | SEV94283.1 | SAMN05421659_10163 | SAMN05421659_102279 | dCMP deaminase. | Xaa-Pro aminopeptidase. | 0.614 |
SEV94283.1 | SEV82012.1 | SAMN05421659_102279 | SAMN05421659_10163 | Xaa-Pro aminopeptidase. | dCMP deaminase. | 0.614 |
SEV94283.1 | SEW33055.1 | SAMN05421659_102279 | SAMN05421659_11054 | Xaa-Pro aminopeptidase. | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | 0.570 |
SEV94283.1 | SEW39991.1 | SAMN05421659_102279 | SAMN05421659_11580 | Xaa-Pro aminopeptidase. | IMP dehydrogenase. | 0.807 |
SEV94283.1 | SEW40512.1 | SAMN05421659_102279 | SAMN05421659_11620 | Xaa-Pro aminopeptidase. | Dipeptidase D. | 0.589 |
SEV94283.1 | aroE | SAMN05421659_102279 | SAMN05421659_10269 | Xaa-Pro aminopeptidase. | Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA). | 0.553 |
SEV94283.1 | aroQ | SAMN05421659_102279 | SAMN05421659_10271 | Xaa-Pro aminopeptidase. | 3-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family. | 0.528 |
SEV94283.1 | efp | SAMN05421659_102279 | SAMN05421659_10272 | Xaa-Pro aminopeptidase. | Elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase. | 0.595 |
SEV94283.1 | guaB | SAMN05421659_102279 | SAMN05421659_103201 | Xaa-Pro aminopeptidase. | IMP dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family. | 0.807 |
SEV94283.1 | metG | SAMN05421659_102279 | SAMN05421659_1041 | Xaa-Pro aminopeptidase. | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | 0.544 |
SEV94283.1 | topA | SAMN05421659_102279 | SAMN05421659_102296 | Xaa-Pro aminopeptidase. | DNA topoisomerase-1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.586 |
SEW33055.1 | SEV94283.1 | SAMN05421659_11054 | SAMN05421659_102279 | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | Xaa-Pro aminopeptidase. | 0.570 |
SEW33055.1 | SEW39991.1 | SAMN05421659_11054 | SAMN05421659_11580 | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | IMP dehydrogenase. | 0.875 |
SEW33055.1 | guaB | SAMN05421659_11054 | SAMN05421659_103201 | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | IMP dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family. | 0.875 |
SEW33055.1 | topA | SAMN05421659_11054 | SAMN05421659_102296 | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | DNA topoisomerase-1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.958 |
SEW39991.1 | SEV94283.1 | SAMN05421659_11580 | SAMN05421659_102279 | IMP dehydrogenase. | Xaa-Pro aminopeptidase. | 0.807 |
SEW39991.1 | SEW33055.1 | SAMN05421659_11580 | SAMN05421659_11054 | IMP dehydrogenase. | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | 0.875 |
SEW39991.1 | SEW40512.1 | SAMN05421659_11580 | SAMN05421659_11620 | IMP dehydrogenase. | Dipeptidase D. | 0.439 |
SEW39991.1 | efp | SAMN05421659_11580 | SAMN05421659_10272 | IMP dehydrogenase. | Elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase. | 0.528 |
SEW39991.1 | guaB | SAMN05421659_11580 | SAMN05421659_103201 | IMP dehydrogenase. | IMP dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family. | 0.931 |
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