STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEW01258.1Ornithine cyclodeaminase. (378 aa)    
Predicted Functional Partners:
SEW01196.1
Sarcosine oxidase subunit beta.
 
 
 0.914
SEW41189.1
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
     
 0.848
proC
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
   
 
 0.844
SEW01226.1
Thioredoxin reductase.
 
     0.817
SEW01240.1
2Fe-2S iron-sulfur cluster binding domain-containing protein.
 
     0.808
SEW01212.1
BFD-like [2Fe-2S] binding domain-containing protein.
 
     0.793
SEV82409.1
Aminotransferase.
    
 0.746
SEW32641.1
Aminotransferase.
    
 0.746
SEW34452.1
Aspartate aminotransferase.
    
 0.655
SEW14110.1
Pimeloyl-ACP methyl ester carboxylesterase.
     
 0.622
Your Current Organism:
Clostridium fimetarium
NCBI taxonomy Id: 99656
Other names: CIP 105360, DSM 9179, [. fimetarium, [Clostridium] fimetarium, strain Z-2189
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.