STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEW09129.1Hypothetical protein. (838 aa)    
Predicted Functional Partners:
SEW09264.1
Protein of unknown function.
 
     0.796
SEW09247.1
Protein of unknown function.
 
     0.749
SEW09143.1
Glycosyltransferase involved in cell wall bisynthesis.
       0.705
SEW30634.1
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
  
  
 0.694
SEW09024.1
Flagellar hook-associated protein 2.
 
    0.673
SEW34988.1
Hypothetical protein.
  
     0.660
SEW09195.1
Glycosyltransferase WbsX.
 
  
 0.634
SEW45822.1
Glycosyl transferases group 1.
 
    0.598
SEW09160.1
Methyltransferase domain-containing protein.
 
     0.588
SEW09282.1
Ribulose-phosphate 3-epimerase.
 
     0.576
Your Current Organism:
Clostridium fimetarium
NCBI taxonomy Id: 99656
Other names: CIP 105360, DSM 9179, [. fimetarium, [Clostridium] fimetarium, strain Z-2189
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.