Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SEV82701.1 | SEW13846.1 | SAMN05421659_101131 | SAMN05421659_10593 | S-ribosylhomocysteine lyase; Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5-dihydroxy-2,3-pentadione (DPD). Belongs to the LuxS family. | Methionine synthase II (cobalamin-independent). | 0.963 |
| SEV82701.1 | SEW16237.1 | SAMN05421659_101131 | SAMN05421659_105234 | S-ribosylhomocysteine lyase; Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5-dihydroxy-2,3-pentadione (DPD). Belongs to the LuxS family. | O-acetylhomoserine (thiol)-lyase. | 0.921 |
| SEV82701.1 | SEW18416.1 | SAMN05421659_101131 | SAMN05421659_10641 | S-ribosylhomocysteine lyase; Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5-dihydroxy-2,3-pentadione (DPD). Belongs to the LuxS family. | Methylenetetrahydrofolate reductase (NADPH); Belongs to the methylenetetrahydrofolate reductase family. | 0.619 |
| SEV82701.1 | SEW32630.1 | SAMN05421659_101131 | SAMN05421659_1101 | S-ribosylhomocysteine lyase; Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5-dihydroxy-2,3-pentadione (DPD). Belongs to the LuxS family. | Homocysteine S-methyltransferase. | 0.909 |
| SEV82701.1 | SEW36862.1 | SAMN05421659_101131 | SAMN05421659_112142 | S-ribosylhomocysteine lyase; Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5-dihydroxy-2,3-pentadione (DPD). Belongs to the LuxS family. | Homoserine dehydrogenase. | 0.922 |
| SEV82701.1 | SEW40747.1 | SAMN05421659_101131 | SAMN05421659_11650 | S-ribosylhomocysteine lyase; Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5-dihydroxy-2,3-pentadione (DPD). Belongs to the LuxS family. | Threonine dehydratase. | 0.917 |
| SEV82701.1 | SEW41158.1 | SAMN05421659_101131 | SAMN05421659_1172 | S-ribosylhomocysteine lyase; Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5-dihydroxy-2,3-pentadione (DPD). Belongs to the LuxS family. | 5-methyltetrahydrofolate--homocysteine methyltransferase. | 0.965 |
| SEV82701.1 | SEW41213.1 | SAMN05421659_101131 | SAMN05421659_11711 | S-ribosylhomocysteine lyase; Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5-dihydroxy-2,3-pentadione (DPD). Belongs to the LuxS family. | O-acetylhomoserine (thiol)-lyase. | 0.922 |
| SEV82701.1 | metG | SAMN05421659_101131 | SAMN05421659_1041 | S-ribosylhomocysteine lyase; Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5-dihydroxy-2,3-pentadione (DPD). Belongs to the LuxS family. | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | 0.443 |
| SEV82701.1 | metK | SAMN05421659_101131 | SAMN05421659_104120 | S-ribosylhomocysteine lyase; Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5-dihydroxy-2,3-pentadione (DPD). Belongs to the LuxS family. | S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme. | 0.442 |
| SEW13846.1 | SEV82701.1 | SAMN05421659_10593 | SAMN05421659_101131 | Methionine synthase II (cobalamin-independent). | S-ribosylhomocysteine lyase; Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5-dihydroxy-2,3-pentadione (DPD). Belongs to the LuxS family. | 0.963 |
| SEW13846.1 | SEW16237.1 | SAMN05421659_10593 | SAMN05421659_105234 | Methionine synthase II (cobalamin-independent). | O-acetylhomoserine (thiol)-lyase. | 0.889 |
| SEW13846.1 | SEW18416.1 | SAMN05421659_10593 | SAMN05421659_10641 | Methionine synthase II (cobalamin-independent). | Methylenetetrahydrofolate reductase (NADPH); Belongs to the methylenetetrahydrofolate reductase family. | 0.877 |
| SEW13846.1 | SEW32630.1 | SAMN05421659_10593 | SAMN05421659_1101 | Methionine synthase II (cobalamin-independent). | Homocysteine S-methyltransferase. | 0.999 |
| SEW13846.1 | SEW36862.1 | SAMN05421659_10593 | SAMN05421659_112142 | Methionine synthase II (cobalamin-independent). | Homoserine dehydrogenase. | 0.911 |
| SEW13846.1 | SEW40747.1 | SAMN05421659_10593 | SAMN05421659_11650 | Methionine synthase II (cobalamin-independent). | Threonine dehydratase. | 0.861 |
| SEW13846.1 | SEW41158.1 | SAMN05421659_10593 | SAMN05421659_1172 | Methionine synthase II (cobalamin-independent). | 5-methyltetrahydrofolate--homocysteine methyltransferase. | 0.969 |
| SEW13846.1 | SEW41213.1 | SAMN05421659_10593 | SAMN05421659_11711 | Methionine synthase II (cobalamin-independent). | O-acetylhomoserine (thiol)-lyase. | 0.889 |
| SEW13846.1 | metG | SAMN05421659_10593 | SAMN05421659_1041 | Methionine synthase II (cobalamin-independent). | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | 0.895 |
| SEW13846.1 | metK | SAMN05421659_10593 | SAMN05421659_104120 | Methionine synthase II (cobalamin-independent). | S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme. | 0.988 |
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