STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEW43212.1Nitroreductase. (194 aa)    
Predicted Functional Partners:
SEW19021.1
Uroporphyrinogen III methyltransferase / synthase.
  
 
 0.702
SEW00289.1
Nitroreductase.
  
     0.597
SEW43205.1
Protein of unknown function.
       0.588
SEW43218.1
NAD-dependent protein deacetylase, SIR2 family.
       0.550
birA
Bifunctional ligase/repressor BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
  
    0.540
SEW33647.1
Nitroreductase.
  
     0.508
SEW43225.1
Radical SAM/SPASM domain protein, ACGX system.
      0.492
SEW43199.1
Protein of unknown function.
       0.491
SEW19604.1
ABC-2 type transport system permease protein.
  
  
 0.487
SEW43191.1
O-acetyl-ADP-ribose deacetylase (regulator of RNase III), contains Macro domain.
       0.479
Your Current Organism:
Clostridium fimetarium
NCBI taxonomy Id: 99656
Other names: CIP 105360, DSM 9179, [. fimetarium, [Clostridium] fimetarium, strain Z-2189
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