Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEW34863.1 | SEW43893.1 | SAMN05421659_111129 | SAMN05421659_12170 | Methyltransferase domain-containing protein. | RNA-binding protein. | 0.499 |
SEW43878.1 | SEW43893.1 | SAMN05421659_12168 | SAMN05421659_12170 | Nicotinate-nucleotide adenylyltransferase. | RNA-binding protein. | 0.807 |
SEW43878.1 | SEW43916.1 | SAMN05421659_12168 | SAMN05421659_12173 | Nicotinate-nucleotide adenylyltransferase. | Hypothetical protein. | 0.564 |
SEW43878.1 | aroE | SAMN05421659_12168 | SAMN05421659_10269 | Nicotinate-nucleotide adenylyltransferase. | Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA). | 0.668 |
SEW43878.1 | nadD | SAMN05421659_12168 | SAMN05421659_12169 | Nicotinate-nucleotide adenylyltransferase. | Nicotinate-nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD). | 0.994 |
SEW43878.1 | obg | SAMN05421659_12168 | SAMN05421659_12171 | Nicotinate-nucleotide adenylyltransferase. | GTP-binding protein; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. | 0.638 |
SEW43878.1 | rplU | SAMN05421659_12168 | SAMN05421659_12174 | Nicotinate-nucleotide adenylyltransferase. | Large subunit ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.474 |
SEW43878.1 | rpmA | SAMN05421659_12168 | SAMN05421659_12172 | Nicotinate-nucleotide adenylyltransferase. | Large subunit ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.490 |
SEW43878.1 | rsfS | SAMN05421659_12168 | SAMN05421659_12167 | Nicotinate-nucleotide adenylyltransferase. | Ribosome-associated protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation. | 0.916 |
SEW43893.1 | SEW34863.1 | SAMN05421659_12170 | SAMN05421659_111129 | RNA-binding protein. | Methyltransferase domain-containing protein. | 0.499 |
SEW43893.1 | SEW43878.1 | SAMN05421659_12170 | SAMN05421659_12168 | RNA-binding protein. | Nicotinate-nucleotide adenylyltransferase. | 0.807 |
SEW43893.1 | SEW43916.1 | SAMN05421659_12170 | SAMN05421659_12173 | RNA-binding protein. | Hypothetical protein. | 0.578 |
SEW43893.1 | aroE | SAMN05421659_12170 | SAMN05421659_10269 | RNA-binding protein. | Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA). | 0.540 |
SEW43893.1 | nadD | SAMN05421659_12170 | SAMN05421659_12169 | RNA-binding protein. | Nicotinate-nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD). | 0.960 |
SEW43893.1 | obg | SAMN05421659_12170 | SAMN05421659_12171 | RNA-binding protein. | GTP-binding protein; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. | 0.849 |
SEW43893.1 | rplU | SAMN05421659_12170 | SAMN05421659_12174 | RNA-binding protein. | Large subunit ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.565 |
SEW43893.1 | rpmA | SAMN05421659_12170 | SAMN05421659_12172 | RNA-binding protein. | Large subunit ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.587 |
SEW43893.1 | rsfS | SAMN05421659_12170 | SAMN05421659_12167 | RNA-binding protein. | Ribosome-associated protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation. | 0.788 |
SEW43893.1 | topA | SAMN05421659_12170 | SAMN05421659_102296 | RNA-binding protein. | DNA topoisomerase-1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.541 |
SEW43916.1 | SEW43878.1 | SAMN05421659_12173 | SAMN05421659_12168 | Hypothetical protein. | Nicotinate-nucleotide adenylyltransferase. | 0.564 |
page 1 of 4