STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SGM_2066MerR family transcriptional regulator. (304 aa)    
Predicted Functional Partners:
SGM_2065
Calcium-binding protein.
       0.772
SGM_2284
merR family transcriptional regulator.
  
     0.711
SGM_2507
merR family transcriptional regulator.
  
     0.698
SGM_4705
Sensory histidine kinase; Overlaps another CDS with the same product name.
   
 0.681
SGM_2067
40-residue YVTN family beta-propeller repeat protein.
       0.670
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.622
SGM_2068
Putative polysaccharide deacetylase.
       0.603
SGM_0041
PAS/PAC sensor hybrid histidine kinase precursor.
   
 0.567
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.555
rpoC
DNA-directed RNA polymerase beta' chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.555
Your Current Organism:
Streptomyces griseoaurantiacus
NCBI taxonomy Id: 996637
Other names: S. griseoaurantiacus M045, Streptomyces griseoaurantiacus M045, Streptomyces griseoaurantiacus str. M045, Streptomyces griseoaurantiacus strain M045
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.