STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SGM_5987Integral membrane protein. (586 aa)    
Predicted Functional Partners:
rsmI
Methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
       0.769
SGM_3522
Similar to conserved protein of unknown function; Belongs to the UPF0232 family.
  
     0.724
SGM_5708
Putative integral membrane protein.
  
     0.714
SGM_3750
Glycosyl transferase.
  
 
 
 0.683
SGM_0508
Similar to conserved protein of unknown function.
  
     0.660
xseB
Exonuclease small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
 
     0.632
SGM_4824
Similar to conserved protein of unknown function.
  
     0.625
rsmA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
 
     0.612
SGM_5985
Transglycosylase domain-containing protein.
     
 0.612
rbpA
Hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters.
  
     0.610
Your Current Organism:
Streptomyces griseoaurantiacus
NCBI taxonomy Id: 996637
Other names: S. griseoaurantiacus M045, Streptomyces griseoaurantiacus M045, Streptomyces griseoaurantiacus str. M045, Streptomyces griseoaurantiacus strain M045
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