STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PB1_00790ABC transporter permease; COG4603 ABC-type uncharacterized transport system, permease component; Belongs to the binding-protein-dependent transport system permease family. (348 aa)    
Predicted Functional Partners:
PB1_00795
ABC transporter ATPase; COG3845 ABC-type uncharacterized transport systems, ATPase components.
 
 
 0.997
PB1_00785
Inner-membrane translocator; COG1079 Uncharacterized ABC-type transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.
 
 
0.992
PB1_00800
Basic membrane lipoprotein; COG1744 Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein.
 
 
 0.963
PB1_02955
Transcriptional activator protein Med; COG1744 Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein.
 
 
 0.921
PB1_11169
Ribose transport ATP-binding protein rbsA; COG1129 ABC-type sugar transport system, ATPase component.
 
  
  0.881
PB1_00805
Transcriptional regulator, GntR family; COG2188 Transcriptional regulators.
       0.405
Your Current Organism:
Bacillus methanolicus PB1
NCBI taxonomy Id: 997296
Other names: B. methanolicus PB1, Bacillus methanolicus NCOMB 13113, Bacillus methanolicus str. PB1, Bacillus methanolicus strain PB1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.