STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PB1_12324LacI family transcriptional repressor; COG1609 Transcriptional regulators. (340 aa)    
Predicted Functional Partners:
PB1_16814
COG0469 Pyruvate kinase; Belongs to the pyruvate kinase family.
    
 
 0.892
PB1_05647
PTS glucose-specific transporter subunit IICBA; COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific.
  
 
 0.879
gltA2
Glutamate synthase, NADPH, large subunit; COG0067 Glutamate synthase domain 1.
    
 
 0.867
gltA
COG0067 Glutamate synthase domain 1.
    
 
 0.867
PB1_11164
COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components.
 
 
 0.860
PB1_05165
Hypothetical protein.
  
 
 0.835
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
    
   0.828
ribBA
3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
   0.828
PB1_11174
COG1879 ABC-type sugar transport system, periplasmic component.
 
 0.801
PB1_11169
Ribose transport ATP-binding protein rbsA; COG1129 ABC-type sugar transport system, ATPase component.
 
 
 0.778
Your Current Organism:
Bacillus methanolicus PB1
NCBI taxonomy Id: 997296
Other names: B. methanolicus PB1, Bacillus methanolicus NCOMB 13113, Bacillus methanolicus str. PB1, Bacillus methanolicus strain PB1
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