STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ktrBTrk family potassium uptake protein TrkB; COG: COG0168. (431 aa)    
Predicted Functional Partners:
trkA3
Trk family potassium (K+) transporter, NAD+ binding protein; COG: COG0569.
 
 
 0.995
EGY80482.1
CPA2 family monovalent cation:proton (H+) antiporter-2; COG: COG0038.
  
 
 0.826
EGY80409.1
Pyruvate-ferredoxin oxidoreductase; COG: COG0674.
   
 
 0.809
trkA
Trk family potassium (K+) transporter, NAD+ binding protein; COG: COG0569.
  
 
 0.771
trkA2
Trk family potassium (K+) transporter, NAD+ binding protein.
  
 
 0.771
EGY80410.1
Pyruvate-ferredoxin oxidoreductase.
   
 
 0.634
nifJ
Pyruvate:ferredoxin oxidoreductase; COG: COG0674.
   
 
 0.634
EGY76648.1
Hypothetical protein.
       0.613
rpmE
50S ribosomal protein L31; Binds the 23S rRNA.
  
    0.607
rplT
50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
       0.603
Your Current Organism:
Peptoniphilus indolicus
NCBI taxonomy Id: 997350
Other names: P. indolicus ATCC 29427, Peptoniphilus indolicus ATCC 29427, Peptoniphilus indolicus CCUG 17639, Peptoniphilus indolicus CCUG 46591, Peptoniphilus indolicus GIFU 7848, Peptoniphilus indolicus NCTC 11088, Peptoniphilus indolicus str. ATCC 29427, Peptoniphilus indolicus strain ATCC 29427
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