STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnjMetallo-beta-lactamase; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay. (554 aa)    
Predicted Functional Partners:
EGY76637.1
Crossover junction endodeoxyribonuclease; COG: COG0816.
 
     0.816
fur2
Ferric uptake regulation protein; COG: COG0735; Belongs to the Fur family.
       0.807
EGY76636.1
Hypothetical protein.
       0.780
cpdB
2',3'-cyclic-nucleotide 2'-phosphodiesterase; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family.
  
 
 0.770
ispA
Geranyltranstransferase; COG: COG0142; Belongs to the FPP/GGPP synthase family.
  
    0.715
EGY76633.1
O-methyltransferase; COG: COG4122.
       0.708
EGY76638.1
Hypothetical protein.
       0.660
yegQ
U32 family peptidase; COG: COG0826.
       0.599
EGY76620.1
Protein of hypothetical function DUF965; COG: COG4472.
 
    0.584
topA
DNA topoisomerase TopA; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA s [...]
 
  
 0.574
Your Current Organism:
Peptoniphilus indolicus
NCBI taxonomy Id: 997350
Other names: P. indolicus ATCC 29427, Peptoniphilus indolicus ATCC 29427, Peptoniphilus indolicus CCUG 17639, Peptoniphilus indolicus CCUG 46591, Peptoniphilus indolicus GIFU 7848, Peptoniphilus indolicus NCTC 11088, Peptoniphilus indolicus str. ATCC 29427, Peptoniphilus indolicus strain ATCC 29427
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