STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGQ13552.1Hypothetical protein. (237 aa)    
Predicted Functional Partners:
EGQ13553.1
Hypothetical protein.
      
0.783
EGQ11761.1
Glycosyl transferase; COG: COG1215.
  
 
 0.705
EGQ16505.1
Hypothetical protein.
    
  0.704
EGQ14581.1
Hypothetical protein.
    
  0.704
EGQ13308.1
Hypothetical protein.
    
  0.704
EGQ13554.1
Hypothetical protein.
       0.632
EGQ11758.1
IgA peptidase M64 superfamily protein.
    
 0.447
EGQ13551.1
Surface protein.
       0.431
EGQ12272.1
Hypothetical protein.
   
 
 0.408
EGQ12072.1
Lipolytic enzyme; COG: COG2755.
     
 0.403
Your Current Organism:
Prevotella nigrescens
NCBI taxonomy Id: 997352
Other names: P. nigrescens ATCC 33563, Prevotella nigrescens ATCC 33563, Prevotella nigrescens JCM 12250, Prevotella nigrescens NCTC 9336, Prevotella nigrescens str. ATCC 33563, Prevotella nigrescens strain ATCC 33563
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.