STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dcuB2Anaerobic C4-dicarboxylate transporter DcuB; COG: COG2704. (174 aa)    
Predicted Functional Partners:
EGQ16378.1
Hypothetical protein; COG: COG2985.
  
     0.554
fumB
Fumarate hydratase beta subunit; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
  
  
 0.437
EGQ19959.1
Hypothetical protein.
  
     0.423
Your Current Organism:
Prevotella pallens
NCBI taxonomy Id: 997353
Other names: P. pallens ATCC 700821, Prevotella pallens AHN 10371, Prevotella pallens ATCC 700821, Prevotella pallens JCM 11140, Prevotella pallens str. ATCC 700821, Prevotella pallens strain ATCC 700821
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.