STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UBXN4UBX domain protein 4. (507 aa)    
Predicted Functional Partners:
ENSOPRP00000008127
annotation not available
    
 0.995
VCP
Valosin containing protein.
    
 0.995
ENSOPRP00000004853
annotation not available
    
 0.962
SPATA5
Spermatogenesis associated 5.
    
 0.922
SPATA5L1
Spermatogenesis associated 5 like 1.
    
 0.922
NSFL1C
NSFL1 cofactor.
    
 0.904
ENSOPRP00000003375
annotation not available
    
 0.892
UBXN8
UBX domain protein 8.
   
 
 0.892
UBXN1
UBX domain protein 1.
     
 0.885
SVIP
Small VCP interacting protein.
     
 0.840
Your Current Organism:
Ochotona princeps
NCBI taxonomy Id: 9978
Other names: American pika, O. princeps, southern American pika
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.