STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FYTTD1Forty-two-three domain containing 1. (282 aa)    
Predicted Functional Partners:
DDX39B
DExD-box helicase 39B.
   
 0.909
SARNP
SAP domain containing ribonucleoprotein.
    
 0.852
POLDIP3
DNA polymerase delta interacting protein 3.
    
 0.806
THOC5
THO complex 5.
    
 0.787
DDX39A
DExD-box helicase 39A.
   
 0.783
THOC7
THO complex 7.
   
 0.775
THOC1
THO complex 1.
   
 0.770
ENSOPRP00000016006
annotation not available
    
 0.755
ENSOPRP00000005085
annotation not available
    
 0.730
ENSOPRP00000001855
annotation not available
    
 0.640
Your Current Organism:
Ochotona princeps
NCBI taxonomy Id: 9978
Other names: American pika, O. princeps, southern American pika
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.