ABCA7 protein (Ochotona princeps) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ABCA7

ATP binding cassette subfamily A member 7. (2100 aa)

Predicted Functional Partners:

ENSOPRP00000002780

0.610

ATP5F1A

0.554

GBE1

0.554

NR1H3

0.548

ENSOPRP00000009055

0.548

ENSOPRP00000010038

0.548

ATP5F1C

0.532

SARM1

0.518

ENSOPRP00000013334

0.517

PDK4

0.510

Your Current Organism:

Ochotona princeps

NCBI taxonomy Id: 9978
Other names: American pika, O. princeps, southern American pika

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABCA7	ATP5F1A	ENSOPRP00000009086	ENSOPRP00000005087	ATP binding cassette subfamily A member 7.	ATP synthase F1 subunit alpha.	0.554
ABCA7	ATP5F1C	ENSOPRP00000009086	ENSOPRP00000010855	ATP binding cassette subfamily A member 7.	ATP synthase F1 subunit gamma.	0.532
ABCA7	ENSOPRP00000002780	ENSOPRP00000009086	ENSOPRP00000002780	ATP binding cassette subfamily A member 7.	annotation not available	0.610
ABCA7	ENSOPRP00000009055	ENSOPRP00000009086	ENSOPRP00000009055	ATP binding cassette subfamily A member 7.	annotation not available	0.548
ABCA7	ENSOPRP00000010038	ENSOPRP00000009086	ENSOPRP00000010038	ATP binding cassette subfamily A member 7.	annotation not available	0.548
ABCA7	ENSOPRP00000013334	ENSOPRP00000009086	ENSOPRP00000013334	ATP binding cassette subfamily A member 7.	annotation not available	0.517
ABCA7	GBE1	ENSOPRP00000009086	ENSOPRP00000010480	ATP binding cassette subfamily A member 7.	1,4-alpha-glucan branching enzyme 1.	0.554
ABCA7	NR1H3	ENSOPRP00000009086	ENSOPRP00000008683	ATP binding cassette subfamily A member 7.	Nuclear receptor subfamily 1 group H member 3.	0.548
ABCA7	PDK4	ENSOPRP00000009086	ENSOPRP00000003796	ATP binding cassette subfamily A member 7.	Pyruvate dehydrogenase kinase 4.	0.510
ABCA7	SARM1	ENSOPRP00000009086	ENSOPRP00000005423	ATP binding cassette subfamily A member 7.	Sterile alpha and TIR motif containing 1.	0.518
ATP5F1A	ABCA7	ENSOPRP00000005087	ENSOPRP00000009086	ATP synthase F1 subunit alpha.	ATP binding cassette subfamily A member 7.	0.554
ATP5F1A	ATP5F1C	ENSOPRP00000005087	ENSOPRP00000010855	ATP synthase F1 subunit alpha.	ATP synthase F1 subunit gamma.	0.999
ATP5F1C	ABCA7	ENSOPRP00000010855	ENSOPRP00000009086	ATP synthase F1 subunit gamma.	ATP binding cassette subfamily A member 7.	0.532
ATP5F1C	ATP5F1A	ENSOPRP00000010855	ENSOPRP00000005087	ATP synthase F1 subunit gamma.	ATP synthase F1 subunit alpha.	0.999
ATP5F1C	ENSOPRP00000002780	ENSOPRP00000010855	ENSOPRP00000002780	ATP synthase F1 subunit gamma.	annotation not available	0.412
ENSOPRP00000002780	ABCA7	ENSOPRP00000002780	ENSOPRP00000009086	annotation not available	ATP binding cassette subfamily A member 7.	0.610
ENSOPRP00000002780	ATP5F1C	ENSOPRP00000002780	ENSOPRP00000010855	annotation not available	ATP synthase F1 subunit gamma.	0.412
ENSOPRP00000009055	ABCA7	ENSOPRP00000009055	ENSOPRP00000009086	annotation not available	ATP binding cassette subfamily A member 7.	0.548
ENSOPRP00000009055	NR1H3	ENSOPRP00000009055	ENSOPRP00000008683	annotation not available	Nuclear receptor subfamily 1 group H member 3.	0.665
ENSOPRP00000010038	ABCA7	ENSOPRP00000010038	ENSOPRP00000009086	annotation not available	ATP binding cassette subfamily A member 7.	0.548