STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C18orf21Chromosome 18 open reading frame 21. (162 aa)    
Predicted Functional Partners:
POP4
POP4 homolog, ribonuclease P/MRP subunit.
   
   0.663
POP5
POP5 homolog, ribonuclease P/MRP subunit.
    
   0.542
RPP14
Ribonuclease P/MRP subunit p14.
    
   0.521
ENSOPRP00000006745
annotation not available
   
   0.478
RPRD1A
Regulation of nuclear pre-mRNA domain containing 1A.
      
 0.477
RNF41
Ring finger protein 41.
      
 0.449
NEPRO
Nucleolus and neural progenitor protein.
    
   0.445
POP7
POP7 homolog, ribonuclease P/MRP subunit.
    
   0.414
Your Current Organism:
Ochotona princeps
NCBI taxonomy Id: 9978
Other names: American pika, O. princeps, southern American pika
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.