STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDC42BPGCDC42 binding protein kinase gamma. (1526 aa)    
Predicted Functional Partners:
PLA2G4A
Phospholipase A2 group IVA.
    
 0.685
ENSOPRP00000011027
annotation not available
   
 0.611
RIPK4
Receptor interacting serine/threonine kinase 4.
    
0.597
RHOF
Ras homolog family member F, filopodia associated.
   
 0.522
ATF4
Activating transcription factor 4.
    
  0.484
ENSOPRP00000012712
annotation not available
    
0.479
F12
Coagulation factor XII.
   
  0.470
HABP2
Hyaluronan binding protein 2.
   
  0.470
ENSOPRP00000013097
annotation not available
   
  0.470
PRKN
Parkin RBR E3 ubiquitin protein ligase.
    
  0.463
Your Current Organism:
Ochotona princeps
NCBI taxonomy Id: 9978
Other names: American pika, O. princeps, southern American pika
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