STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VPS13BVacuolar protein sorting 13 homolog B. (3936 aa)    
Predicted Functional Partners:
PGK2
Phosphoglycerate kinase 2.
      
 0.706
RAD23B
RAD23 homolog B, nucleotide excision repair protein.
    
 
 0.699
ZNF462
Zinc finger protein 462.
      
 0.694
ENSOPRP00000003477
annotation not available
    
 
 0.684
PGAP2
post-GPI attachment to proteins 2.
   
  
 0.654
EXOC2
Exocyst complex component 2.
   
  
 0.648
MAP3K7
Mitogen-activated protein kinase kinase kinase 7.
      
 0.637
ACSL3
acyl-CoA synthetase long chain family member 3.
      
 0.637
PCYOX1L
Prenylcysteine oxidase 1 like.
      
 0.607
DNAJC6
DnaJ heat shock protein family (Hsp40) member C6.
    
 
 0.602
Your Current Organism:
Ochotona princeps
NCBI taxonomy Id: 9978
Other names: American pika, O. princeps, southern American pika
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.