CEBPE protein (Ochotona princeps) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CEBPE

CCAAT enhancer binding protein epsilon. (173 aa)

Predicted Functional Partners:

CDK4

0.903

CDK2

0.896

COX5A

0.889

FLT3

0.878

ENSOPRP00000014432

0.873

ATF4

0.872

COX2

0.864

RUNX1T1

0.861

ENSOPRP00000001860

0.837

ENSOPRP00000015134

0.837

Your Current Organism:

Ochotona princeps

NCBI taxonomy Id: 9978
Other names: American pika, O. princeps, southern American pika

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATF4	CEBPE	ENSOPRP00000009672	ENSOPRP00000014992	Activating transcription factor 4.	CCAAT enhancer binding protein epsilon.	0.872
CDK2	CDK4	ENSOPRP00000007198	ENSOPRP00000006069	Cyclin dependent kinase 2.	Cyclin dependent kinase 4.	0.955
CDK2	CEBPE	ENSOPRP00000007198	ENSOPRP00000014992	Cyclin dependent kinase 2.	CCAAT enhancer binding protein epsilon.	0.896
CDK4	CDK2	ENSOPRP00000006069	ENSOPRP00000007198	Cyclin dependent kinase 4.	Cyclin dependent kinase 2.	0.955
CDK4	CEBPE	ENSOPRP00000006069	ENSOPRP00000014992	Cyclin dependent kinase 4.	CCAAT enhancer binding protein epsilon.	0.903
CEBPE	ATF4	ENSOPRP00000014992	ENSOPRP00000009672	CCAAT enhancer binding protein epsilon.	Activating transcription factor 4.	0.872
CEBPE	CDK2	ENSOPRP00000014992	ENSOPRP00000007198	CCAAT enhancer binding protein epsilon.	Cyclin dependent kinase 2.	0.896
CEBPE	CDK4	ENSOPRP00000014992	ENSOPRP00000006069	CCAAT enhancer binding protein epsilon.	Cyclin dependent kinase 4.	0.903
CEBPE	COX2	ENSOPRP00000014992	ENSOPRP00000016374	CCAAT enhancer binding protein epsilon.	Cytochrome c oxidase subunit II.	0.864
CEBPE	COX5A	ENSOPRP00000014992	ENSOPRP00000009695	CCAAT enhancer binding protein epsilon.	Cytochrome c oxidase subunit 5A.	0.889
CEBPE	ENSOPRP00000001860	ENSOPRP00000014992	ENSOPRP00000001860	CCAAT enhancer binding protein epsilon.	annotation not available	0.837
CEBPE	ENSOPRP00000014432	ENSOPRP00000014992	ENSOPRP00000014432	CCAAT enhancer binding protein epsilon.	annotation not available	0.873
CEBPE	ENSOPRP00000015134	ENSOPRP00000014992	ENSOPRP00000015134	CCAAT enhancer binding protein epsilon.	annotation not available	0.837
CEBPE	FLT3	ENSOPRP00000014992	ENSOPRP00000006248	CCAAT enhancer binding protein epsilon.	Fms related tyrosine kinase 3.	0.878
CEBPE	RUNX1T1	ENSOPRP00000014992	ENSOPRP00000003868	CCAAT enhancer binding protein epsilon.	RUNX1 partner transcriptional co-repressor 1.	0.861
COX2	CEBPE	ENSOPRP00000016374	ENSOPRP00000014992	Cytochrome c oxidase subunit II.	CCAAT enhancer binding protein epsilon.	0.864
COX2	COX5A	ENSOPRP00000016374	ENSOPRP00000009695	Cytochrome c oxidase subunit II.	Cytochrome c oxidase subunit 5A.	0.999
COX2	ENSOPRP00000001860	ENSOPRP00000016374	ENSOPRP00000001860	Cytochrome c oxidase subunit II.	annotation not available	0.998
COX2	ENSOPRP00000015134	ENSOPRP00000016374	ENSOPRP00000015134	Cytochrome c oxidase subunit II.	annotation not available	0.991
COX5A	CEBPE	ENSOPRP00000009695	ENSOPRP00000014992	Cytochrome c oxidase subunit 5A.	CCAAT enhancer binding protein epsilon.	0.889