Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TMC5Transmembrane channel like 5. (950 aa)    
Predicted Functional Partners:
KAT6B
Lysine acetyltransferase 6B.
    
 0.717
SPATS1
Spermatogenesis associated serine rich 1.
      
 0.671
ARID4B
AT-rich interaction domain 4B.
    
 0.648
ARID4A
AT-rich interaction domain 4A.
    
 0.648
MYSM1
Myb like, SWIRM and MPN domains 1.
    
 0.638
KNTC1
Kinetochore associated 1.
      
 0.633
SKIV2L
Ski2 like RNA helicase.
    
 0.626
RASA1
RAS p21 protein activator 1.
    
 
 0.625
LRGUK
Leucine rich repeats and guanylate kinase domain containing.
    
 0.621
ENSSDAP00000007355
annotation not available
      
 0.615
Your Current Organism:
Spermophilus dauricus
NCBI taxonomy Id: 99837
Other names: Citellus dauricus, Daurian ground squirrel, S. dauricus
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