ENSSDAP00000001047 protein (Spermophilus dauricus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSSDAP00000001047

annotation not available (127 aa)

Predicted Functional Partners:

MYO3A

0.689

MYO3B

0.689

EIF1AX

0.687

ENSSDAP00000003509

0.653

RYR3

0.653

RYR2

0.653

ENSSDAP00000025847

0.653

HSPA5

0.611

FKBP1B

0.604

ENSSDAP00000026827

0.601

Your Current Organism:

Spermophilus dauricus

NCBI taxonomy Id: 99837
Other names: Citellus dauricus, Daurian ground squirrel, S. dauricus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EIF1AX	ENSSDAP00000001047	ENSSDAP00000009357	ENSSDAP00000001047	Eukaryotic translation initiation factor 1A X-linked.	annotation not available	0.687
EIF1AX	ENSSDAP00000026827	ENSSDAP00000009357	ENSSDAP00000026827	Eukaryotic translation initiation factor 1A X-linked.	annotation not available	0.704
EIF1AX	FKBP1B	ENSSDAP00000009357	ENSSDAP00000026528	Eukaryotic translation initiation factor 1A X-linked.	FKBP prolyl isomerase 1B.	0.704
ENSSDAP00000001047	EIF1AX	ENSSDAP00000001047	ENSSDAP00000009357	annotation not available	Eukaryotic translation initiation factor 1A X-linked.	0.687
ENSSDAP00000001047	ENSSDAP00000003509	ENSSDAP00000001047	ENSSDAP00000003509	annotation not available	annotation not available	0.653
ENSSDAP00000001047	ENSSDAP00000025847	ENSSDAP00000001047	ENSSDAP00000025847	annotation not available	annotation not available	0.653
ENSSDAP00000001047	ENSSDAP00000026827	ENSSDAP00000001047	ENSSDAP00000026827	annotation not available	annotation not available	0.601
ENSSDAP00000001047	FKBP1B	ENSSDAP00000001047	ENSSDAP00000026528	annotation not available	FKBP prolyl isomerase 1B.	0.604
ENSSDAP00000001047	HSPA5	ENSSDAP00000001047	ENSSDAP00000014209	annotation not available	Heat shock protein family A (Hsp70) member 5.	0.611
ENSSDAP00000001047	MYO3A	ENSSDAP00000001047	ENSSDAP00000018927	annotation not available	Myosin IIIA.	0.689
ENSSDAP00000001047	MYO3B	ENSSDAP00000001047	ENSSDAP00000020758	annotation not available	Myosin IIIB.	0.689
ENSSDAP00000001047	RYR2	ENSSDAP00000001047	ENSSDAP00000017820	annotation not available	Ryanodine receptor 2.	0.653
ENSSDAP00000001047	RYR3	ENSSDAP00000001047	ENSSDAP00000011250	annotation not available	Ryanodine receptor 3.	0.653
ENSSDAP00000003509	ENSSDAP00000001047	ENSSDAP00000003509	ENSSDAP00000001047	annotation not available	annotation not available	0.653
ENSSDAP00000003509	ENSSDAP00000025847	ENSSDAP00000003509	ENSSDAP00000025847	annotation not available	annotation not available	0.962
ENSSDAP00000003509	ENSSDAP00000026827	ENSSDAP00000003509	ENSSDAP00000026827	annotation not available	annotation not available	0.941
ENSSDAP00000003509	FKBP1B	ENSSDAP00000003509	ENSSDAP00000026528	annotation not available	FKBP prolyl isomerase 1B.	0.955
ENSSDAP00000003509	RYR2	ENSSDAP00000003509	ENSSDAP00000017820	annotation not available	Ryanodine receptor 2.	0.959
ENSSDAP00000003509	RYR3	ENSSDAP00000003509	ENSSDAP00000011250	annotation not available	Ryanodine receptor 3.	0.974
ENSSDAP00000025847	ENSSDAP00000001047	ENSSDAP00000025847	ENSSDAP00000001047	annotation not available	annotation not available	0.653