Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ASB6Ankyrin repeat and SOCS box containing 6. (381 aa)    
Predicted Functional Partners:
CUL5
Cullin 5.
    
 0.986
RNF41
Ring finger protein 41.
    
 0.984
ENSSDAP00000003405
annotation not available
    
  0.941
POLR2B
RNA polymerase II subunit B.
   
   0.929
POLR2D
RNA polymerase II subunit D.
    
   0.928
ENSSDAP00000009645
annotation not available
    
 0.922
RPRD1B
Regulation of nuclear pre-mRNA domain containing 1B.
    
   0.887
COPS5
COP9 signalosome subunit 5.
    
  0.877
ASB9
Ankyrin repeat and SOCS box containing 9.
    
 0.862
RPAP2
RNA polymerase II associated protein 2.
    
   0.855
Your Current Organism:
Spermophilus dauricus
NCBI taxonomy Id: 99837
Other names: Citellus dauricus, Daurian ground squirrel, S. dauricus
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