Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C12orf43Chromosome 12 open reading frame 43. (284 aa)    
Predicted Functional Partners:
GPATCH8
G-patch domain containing 8.
      
 0.851
CRCP
CGRP receptor component.
   
    0.660
XYLT1
Xylosyltransferase 1.
      
 0.649
ANKRD13A
Ankyrin repeat domain 13A.
      
 0.636
ENSSDAP00000009697
annotation not available
   
  
 0.628
TP53BP1
Tumor protein p53 binding protein 1.
      
 0.615
PPM1D
Protein phosphatase, Mg2+/Mn2+ dependent 1D.
      
 0.613
RPL4
Ribosomal protein L4.
      
 0.612
ENSSDAP00000026412
annotation not available
      
 0.610
FAM78B
Family with sequence similarity 78 member B.
      
 0.605
Your Current Organism:
Spermophilus dauricus
NCBI taxonomy Id: 99837
Other names: Citellus dauricus, Daurian ground squirrel, S. dauricus
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