Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
USP53Ubiquitin specific peptidase 53. (1068 aa)    
Predicted Functional Partners:
MYOZ1
Myozenin 1.
   
 
  0.747
PSMB1
Proteasome 20S subunit beta 1.
    
   0.742
ENSSDAP00000008146
annotation not available
    
 
 0.725
UBA52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 
 0.725
ENSSDAP00000004379
annotation not available
    
  0.690
RPS27A
Ribosomal protein S27a.
    
  0.690
ENSSDAP00000016414
annotation not available
    
  0.690
ENSSDAP00000008532
annotation not available
    
   0.673
SYNPO2L
Synaptopodin 2 like.
   
 
 0.620
OTUB1
OTU deubiquitinase, ubiquitin aldehyde binding 1.
      
 0.574
Your Current Organism:
Spermophilus dauricus
NCBI taxonomy Id: 99837
Other names: Citellus dauricus, Daurian ground squirrel, S. dauricus
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