RCOR3 protein (Spermophilus dauricus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

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[Homology]

Score

RCOR3

REST corepressor 3. (367 aa)

Predicted Functional Partners:

HMG20B

0.990

RCOR1

0.988

HMG20A

0.986

HDAC2

0.978

ENSSDAP00000007757

0.974

ENSSDAP00000013500

0.974

SNAI1

0.962

ENSSDAP00000002923

0.957

ENSSDAP00000013554

0.957

ENSSDAP00000007678

0.955

Your Current Organism:

Spermophilus dauricus

NCBI taxonomy Id: 99837
Other names: Citellus dauricus, Daurian ground squirrel, S. dauricus

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSDAP00000002923	ENSSDAP00000007678	ENSSDAP00000002923	ENSSDAP00000007678	annotation not available	annotation not available	0.687
ENSSDAP00000002923	ENSSDAP00000007757	ENSSDAP00000002923	ENSSDAP00000007757	annotation not available	annotation not available	0.967
ENSSDAP00000002923	ENSSDAP00000013500	ENSSDAP00000002923	ENSSDAP00000013500	annotation not available	annotation not available	0.967
ENSSDAP00000002923	HDAC2	ENSSDAP00000002923	ENSSDAP00000014026	annotation not available	Histone deacetylase 2.	0.961
ENSSDAP00000002923	HMG20B	ENSSDAP00000002923	ENSSDAP00000008880	annotation not available	High mobility group 20B.	0.680
ENSSDAP00000002923	RCOR1	ENSSDAP00000002923	ENSSDAP00000018990	annotation not available	REST corepressor 1.	0.991
ENSSDAP00000002923	RCOR3	ENSSDAP00000002923	ENSSDAP00000001466	annotation not available	REST corepressor 3.	0.957
ENSSDAP00000007678	ENSSDAP00000002923	ENSSDAP00000007678	ENSSDAP00000002923	annotation not available	annotation not available	0.687
ENSSDAP00000007678	ENSSDAP00000007757	ENSSDAP00000007678	ENSSDAP00000007757	annotation not available	annotation not available	0.975
ENSSDAP00000007678	ENSSDAP00000013500	ENSSDAP00000007678	ENSSDAP00000013500	annotation not available	annotation not available	0.975
ENSSDAP00000007678	ENSSDAP00000013554	ENSSDAP00000007678	ENSSDAP00000013554	annotation not available	annotation not available	0.687
ENSSDAP00000007678	HDAC2	ENSSDAP00000007678	ENSSDAP00000014026	annotation not available	Histone deacetylase 2.	0.983
ENSSDAP00000007678	HMG20A	ENSSDAP00000007678	ENSSDAP00000017175	annotation not available	High mobility group 20A.	0.989
ENSSDAP00000007678	HMG20B	ENSSDAP00000007678	ENSSDAP00000008880	annotation not available	High mobility group 20B.	0.998
ENSSDAP00000007678	RCOR1	ENSSDAP00000007678	ENSSDAP00000018990	annotation not available	REST corepressor 1.	0.999
ENSSDAP00000007678	RCOR3	ENSSDAP00000007678	ENSSDAP00000001466	annotation not available	REST corepressor 3.	0.955
ENSSDAP00000007757	ENSSDAP00000002923	ENSSDAP00000007757	ENSSDAP00000002923	annotation not available	annotation not available	0.967
ENSSDAP00000007757	ENSSDAP00000007678	ENSSDAP00000007757	ENSSDAP00000007678	annotation not available	annotation not available	0.975
ENSSDAP00000007757	ENSSDAP00000013500	ENSSDAP00000007757	ENSSDAP00000013500	annotation not available	annotation not available	0.540
ENSSDAP00000007757	ENSSDAP00000013554	ENSSDAP00000007757	ENSSDAP00000013554	annotation not available	annotation not available	0.967