Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EBF4EBF family member 4. (600 aa)    
Predicted Functional Partners:
EBF2
EBF transcription factor 2.
   
    0.925
ZNF521
Zinc finger protein 521.
    
 0.826
EEF1G
Eukaryotic translation elongation factor 1 gamma.
    
   0.768
UFD1
Ubiquitin recognition factor in ER associated degradation 1.
    
 
 0.753
YOD1
YOD1 deubiquitinase.
    
   0.724
PLAA
Phospholipase A2 activating protein.
    
   0.724
ZNF423
Zinc finger protein 423.
    
 0.718
ATPAF2
ATP synthase mitochondrial F1 complex assembly factor 2.
    
   0.693
LHX2
LIM homeobox 2.
   
 
 0.652
HNRNPU
Heterogeneous nuclear ribonucleoprotein U.
     
 0.652
Your Current Organism:
Spermophilus dauricus
NCBI taxonomy Id: 99837
Other names: Citellus dauricus, Daurian ground squirrel, S. dauricus
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