Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PTPDC1Protein tyrosine phosphatase domain containing 1. (748 aa)    
Predicted Functional Partners:
PPP2R2D
Protein phosphatase 2 regulatory subunit Bdelta.
    
  0.907
ENSSDAP00000004961
annotation not available
    
  0.842
ENSSDAP00000019032
annotation not available
    
  0.842
ENSSDAP00000023568
annotation not available
    
  0.842
RYK
Receptor like tyrosine kinase.
    
 0.793
WLS
Wnt ligand secretion mediator.
    
 0.782
PPP2R2C
Protein phosphatase 2 regulatory subunit Bgamma.
    
  0.775
PPP2R2B
Protein phosphatase 2 regulatory subunit Bbeta.
    
  0.769
PORCN
Porcupine O-acyltransferase.
    
 0.765
NOTUM
Notum, palmitoleoyl-protein carboxylesterase.
    
 0.753
Your Current Organism:
Spermophilus dauricus
NCBI taxonomy Id: 99837
Other names: Citellus dauricus, Daurian ground squirrel, S. dauricus
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