Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ERCC6ERCC excision repair 6, chromatin remodeling factor. (1483 aa)    
Predicted Functional Partners:
ENSSDAP00000009701
annotation not available
  
 0.995
ENSSDAP00000003405
annotation not available
    
 0.989
ENSSDAP00000022473
annotation not available
    
 0.989
POLR2I
RNA polymerase II subunit I.
    
 0.985
POLR2D
RNA polymerase II subunit D.
    
 0.977
DDB1
Damage specific DNA binding protein 1.
    
 0.974
POLR2B
RNA polymerase II subunit B.
   
 0.974
UBA52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
   
  0.969
POLR2G
RNA polymerase II subunit G.
    
 0.966
TCEA1
Transcription elongation factor A1.
    
 0.964
Your Current Organism:
Spermophilus dauricus
NCBI taxonomy Id: 99837
Other names: Citellus dauricus, Daurian ground squirrel, S. dauricus
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