SNX24 protein (Spermophilus dauricus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

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[Homology]

Score

SNX24

Sorting nexin 24. (157 aa)

Predicted Functional Partners:

GAPVD1

0.952

SNX22

0.952

SPATA46

0.933

ENSSDAP00000026842

0.900

CSNK1D

0.858

CSNK1A1

0.854

ENSSDAP00000019544

0.854

ENSSDAP00000011047

0.819

PACS1

0.786

TSSK1B

0.759

Your Current Organism:

Spermophilus dauricus

NCBI taxonomy Id: 99837
Other names: Citellus dauricus, Daurian ground squirrel, S. dauricus

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CSNK1A1	CSNK1D	ENSSDAP00000019314	ENSSDAP00000019480	Casein kinase 1 alpha 1.	Casein kinase 1 delta.	0.941
CSNK1A1	ENSSDAP00000026842	ENSSDAP00000019314	ENSSDAP00000026842	Casein kinase 1 alpha 1.	annotation not available	0.924
CSNK1A1	GAPVD1	ENSSDAP00000019314	ENSSDAP00000014179	Casein kinase 1 alpha 1.	GTPase activating protein and VPS9 domains 1.	0.860
CSNK1A1	SNX24	ENSSDAP00000019314	ENSSDAP00000001600	Casein kinase 1 alpha 1.	Sorting nexin 24.	0.854
CSNK1A1	SPATA46	ENSSDAP00000019314	ENSSDAP00000013145	Casein kinase 1 alpha 1.	Spermatogenesis associated 46.	0.785
CSNK1D	CSNK1A1	ENSSDAP00000019480	ENSSDAP00000019314	Casein kinase 1 delta.	Casein kinase 1 alpha 1.	0.941
CSNK1D	ENSSDAP00000011047	ENSSDAP00000019480	ENSSDAP00000011047	Casein kinase 1 delta.	annotation not available	0.922
CSNK1D	ENSSDAP00000019544	ENSSDAP00000019480	ENSSDAP00000019544	Casein kinase 1 delta.	annotation not available	0.941
CSNK1D	ENSSDAP00000026842	ENSSDAP00000019480	ENSSDAP00000026842	Casein kinase 1 delta.	annotation not available	0.998
CSNK1D	GAPVD1	ENSSDAP00000019480	ENSSDAP00000014179	Casein kinase 1 delta.	GTPase activating protein and VPS9 domains 1.	0.962
CSNK1D	SNX24	ENSSDAP00000019480	ENSSDAP00000001600	Casein kinase 1 delta.	Sorting nexin 24.	0.858
ENSSDAP00000011047	CSNK1D	ENSSDAP00000011047	ENSSDAP00000019480	annotation not available	Casein kinase 1 delta.	0.922
ENSSDAP00000011047	ENSSDAP00000026842	ENSSDAP00000011047	ENSSDAP00000026842	annotation not available	annotation not available	0.922
ENSSDAP00000011047	GAPVD1	ENSSDAP00000011047	ENSSDAP00000014179	annotation not available	GTPase activating protein and VPS9 domains 1.	0.825
ENSSDAP00000011047	SNX24	ENSSDAP00000011047	ENSSDAP00000001600	annotation not available	Sorting nexin 24.	0.819
ENSSDAP00000011047	SPATA46	ENSSDAP00000011047	ENSSDAP00000013145	annotation not available	Spermatogenesis associated 46.	0.785
ENSSDAP00000019544	CSNK1D	ENSSDAP00000019544	ENSSDAP00000019480	annotation not available	Casein kinase 1 delta.	0.941
ENSSDAP00000019544	ENSSDAP00000026842	ENSSDAP00000019544	ENSSDAP00000026842	annotation not available	annotation not available	0.924
ENSSDAP00000019544	GAPVD1	ENSSDAP00000019544	ENSSDAP00000014179	annotation not available	GTPase activating protein and VPS9 domains 1.	0.860
ENSSDAP00000019544	SNX24	ENSSDAP00000019544	ENSSDAP00000001600	annotation not available	Sorting nexin 24.	0.854