Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RLBP1Retinaldehyde binding protein 1. (317 aa)    
Predicted Functional Partners:
ENSSDAP00000004310
annotation not available
    
 0.983
ENSSDAP00000023292
annotation not available
    
 0.926
RDH12
Retinol dehydrogenase 12.
    
 0.906
RDH16
Retinol dehydrogenase 16.
    
 0.783
RDH5
Retinol dehydrogenase 5.
    
 0.783
RDH8
Retinol dehydrogenase 8.
    
 0.780
SDR9C7
Short chain dehydrogenase/reductase family 9C member 7.
    
 0.747
DHRS9
Dehydrogenase/reductase 9.
    
 0.739
NR2E3
Nuclear receptor subfamily 2 group E member 3.
    
 
 0.732
DHRS3
Dehydrogenase/reductase 3.
    
 0.728
Your Current Organism:
Spermophilus dauricus
NCBI taxonomy Id: 99837
Other names: Citellus dauricus, Daurian ground squirrel, S. dauricus
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