Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
COL3A1Collagen type III alpha 1 chain. (1458 aa)    
Predicted Functional Partners:
COL1A1
Collagen type I alpha 1 chain.
   
 
 0.999
COL1A2
Collagen type I alpha 2 chain.
   
 0.999
COL6A1
Collagen type VI alpha 1 chain.
   
 0.992
SPARC
Secreted protein acidic and cysteine rich.
   
 0.986
COL5A2
Collagen type V alpha 2 chain.
   
 
 0.975
COL6A2
Collagen type VI alpha 2 chain.
   
 0.972
LUM
Lumican.
   
 
 0.968
DCN
Decorin.
   
 
 0.966
ITGA2
Integrin subunit alpha 2.
    
 0.960
ITGB1
Integrin subunit beta 1.
    
 0.956
Your Current Organism:
Spermophilus dauricus
NCBI taxonomy Id: 99837
Other names: Citellus dauricus, Daurian ground squirrel, S. dauricus
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