Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SUB1SUB1 regulator of transcription. (127 aa)    
Predicted Functional Partners:
SYMPK
Symplekin.
    
 
 0.907
GTF2B
General transcription factor IIB.
    
 
 0.885
SUPT5H
SPT5 homolog, DSIF elongation factor subunit.
    
 
 0.874
POLR2C
RNA polymerase II subunit C.
   
 
 0.844
TOP1
DNA topoisomerase I.
   
 
 0.828
ENSSDAP00000011785
annotation not available
    
   0.823
SRRM2
Serine/arginine repetitive matrix 2.
   
   0.815
ENSSDAP00000009711
annotation not available
    
 
 0.812
C6orf15
Chromosome 6 open reading frame 15.
    
 
 0.809
EP300
E1A binding protein p300.
    
 
 0.797
Your Current Organism:
Spermophilus dauricus
NCBI taxonomy Id: 99837
Other names: Citellus dauricus, Daurian ground squirrel, S. dauricus
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