Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PITX1Paired like homeodomain 1. (305 aa)    
Predicted Functional Partners:
ENSSDAP00000024333
annotation not available
   
   0.912
RBPMS
RNA binding protein, mRNA processing factor.
    
   0.884
ENSSDAP00000015551
annotation not available
   
   0.837
ENSSDAP00000015582
annotation not available
   
   0.837
CTNNB1
Catenin beta 1.
    
 
 0.820
TBX4
T-box transcription factor 4.
    
 
 0.781
ZNF354C
Zinc finger protein 354C.
    
 
 0.726
AHCYL1
Adenosylhomocysteinase like 1.
    
   0.678
AHCYL2
Adenosylhomocysteinase like 2.
    
   0.678
TBX19
T-box transcription factor 19.
    
 
 0.664
Your Current Organism:
Spermophilus dauricus
NCBI taxonomy Id: 99837
Other names: Citellus dauricus, Daurian ground squirrel, S. dauricus
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