Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C11orf53Chromosome 11 open reading frame 53. (235 aa)    
Predicted Functional Partners:
POU2F3
POU class 2 homeobox 3.
    
 
 0.931
POU2F1
POU class 2 homeobox 1.
    
 
 0.886
POU2F2
POU class 2 homeobox 2.
    
 
 0.874
POU1F1
POU class 1 homeobox 1.
    
 
 0.757
POU3F4
POU class 3 homeobox 4.
    
 
 0.750
COLCA2
Colorectal cancer associated 2.
  
   
 0.721
AVIL
Advillin.
      
 0.609
SERTAD3
SERTA domain containing 3.
   
    0.573
ENSSDAP00000004520
annotation not available
    
 
 0.532
POU5F2
POU domain class 5, transcription factor 2.
    
 
 0.532
Your Current Organism:
Spermophilus dauricus
NCBI taxonomy Id: 99837
Other names: Citellus dauricus, Daurian ground squirrel, S. dauricus
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