Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
PPM1LProtein phosphatase, Mg2+/Mn2+ dependent 1L. (360 aa)    
Predicted Functional Partners:
DBT
Dihydrolipoamide branched chain transacylase E2.
   
 0.915
BCKDHB
Branched chain keto acid dehydrogenase E1 subunit beta.
   
 0.913
ENSSDAP00000005979
annotation not available
  
 0.900
ACBD3
acyl-CoA binding domain containing 3.
   
  
 0.861
NME8
NME/NM23 family member 8.
   
 0.853
PDHA1
Pyruvate dehydrogenase E1 alpha 1 subunit.
   
 0.824
VAPA
VAMP associated protein A.
    
 0.809
TRAF7
TNF receptor associated factor 7.
   
 0.793
ENSSDAP00000023788
annotation not available
   
 0.793
LRRC34
Leucine rich repeat containing 34.
   
 0.781
Your Current Organism:
Spermophilus dauricus
NCBI taxonomy Id: 99837
Other names: Citellus dauricus, Daurian ground squirrel, S. dauricus
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