Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TMEM38BTransmembrane protein 38B. (237 aa)    
Predicted Functional Partners:
GOLIM4
Golgi integral membrane protein 4.
      
 0.853
SEMA6D
Semaphorin 6D.
      
 0.839
NGLY1
N-glycanase 1.
    
   0.806
LRRTM2
Leucine rich repeat transmembrane neuronal 2.
    
   0.805
FKBP10
FKBP prolyl isomerase 10.
      
 0.708
MBTPS2
Membrane bound transcription factor peptidase, site 2.
      
 0.677
ITM2B
Integral membrane protein 2B.
    
   0.655
PPIB
Peptidylprolyl isomerase B.
      
 0.615
SLC25A16
Solute carrier family 25 member 16.
      
 0.614
SERPINF1
Serpin family F member 1.
      
 0.609
Your Current Organism:
Spermophilus dauricus
NCBI taxonomy Id: 99837
Other names: Citellus dauricus, Daurian ground squirrel, S. dauricus
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