Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DEPDC7DEP domain containing 7. (506 aa)    
Predicted Functional Partners:
ATP8B4
ATPase phospholipid transporting 8B4 (putative).
      
 0.786
CSTF3
Cleavage stimulation factor subunit 3.
      
 0.755
EIF3M
Eukaryotic translation initiation factor 3 subunit M.
      
 0.754
FLRT3
Fibronectin leucine rich transmembrane protein 3.
      
 0.736
TTC5
Tetratricopeptide repeat domain 5.
    
   0.679
RASL10B
RAS like family 10 member B.
      
 0.676
FAM135B
Family with sequence similarity 135 member B.
      
 0.668
RASL11B
RAS like family 11 member B.
      
 0.625
BTBD11
BTB domain containing 11.
      
 0.623
TMEM47
Transmembrane protein 47.
      
 0.614
Your Current Organism:
Spermophilus dauricus
NCBI taxonomy Id: 99837
Other names: Citellus dauricus, Daurian ground squirrel, S. dauricus
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