TSPAN11 protein (Spermophilus dauricus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

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[Homology]

Score

TSPAN11

Tetraspanin 11. (249 aa)

Predicted Functional Partners:

ITGB4

0.935

ITGA6

0.915

ITGB1

0.912

ENSSDAP00000012406

0.900

ENSSDAP00000012428

0.900

GRAMD1C

0.857

ENSSDAP00000003118

0.856

ENSSDAP00000016886

0.856

PTGFRN

0.814

ITGA7

0.784

Your Current Organism:

Spermophilus dauricus

NCBI taxonomy Id: 99837
Other names: Citellus dauricus, Daurian ground squirrel, S. dauricus

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSDAP00000003118	ENSSDAP00000012406	ENSSDAP00000003118	ENSSDAP00000012406	annotation not available	annotation not available	0.900
ENSSDAP00000003118	ENSSDAP00000012428	ENSSDAP00000003118	ENSSDAP00000012428	annotation not available	annotation not available	0.900
ENSSDAP00000003118	ITGA6	ENSSDAP00000003118	ENSSDAP00000012716	annotation not available	Integrin subunit alpha 6.	0.944
ENSSDAP00000003118	ITGA7	ENSSDAP00000003118	ENSSDAP00000007686	annotation not available	Integrin subunit alpha 7.	0.836
ENSSDAP00000003118	ITGB1	ENSSDAP00000003118	ENSSDAP00000002777	annotation not available	Integrin subunit beta 1.	0.975
ENSSDAP00000003118	ITGB4	ENSSDAP00000003118	ENSSDAP00000006517	annotation not available	Integrin subunit beta 4.	0.775
ENSSDAP00000003118	PTGFRN	ENSSDAP00000003118	ENSSDAP00000022579	annotation not available	Prostaglandin F2 receptor inhibitor.	0.969
ENSSDAP00000003118	TSPAN11	ENSSDAP00000003118	ENSSDAP00000004591	annotation not available	Tetraspanin 11.	0.856
ENSSDAP00000012406	ENSSDAP00000003118	ENSSDAP00000012406	ENSSDAP00000003118	annotation not available	annotation not available	0.900
ENSSDAP00000012406	ENSSDAP00000012428	ENSSDAP00000012406	ENSSDAP00000012428	annotation not available	annotation not available	0.951
ENSSDAP00000012406	ENSSDAP00000016886	ENSSDAP00000012406	ENSSDAP00000016886	annotation not available	annotation not available	0.900
ENSSDAP00000012406	ITGA6	ENSSDAP00000012406	ENSSDAP00000012716	annotation not available	Integrin subunit alpha 6.	0.928
ENSSDAP00000012406	ITGA7	ENSSDAP00000012406	ENSSDAP00000007686	annotation not available	Integrin subunit alpha 7.	0.811
ENSSDAP00000012406	ITGB1	ENSSDAP00000012406	ENSSDAP00000002777	annotation not available	Integrin subunit beta 1.	0.996
ENSSDAP00000012406	ITGB4	ENSSDAP00000012406	ENSSDAP00000006517	annotation not available	Integrin subunit beta 4.	0.990
ENSSDAP00000012406	TSPAN11	ENSSDAP00000012406	ENSSDAP00000004591	annotation not available	Tetraspanin 11.	0.900
ENSSDAP00000012428	ENSSDAP00000003118	ENSSDAP00000012428	ENSSDAP00000003118	annotation not available	annotation not available	0.900
ENSSDAP00000012428	ENSSDAP00000012406	ENSSDAP00000012428	ENSSDAP00000012406	annotation not available	annotation not available	0.951
ENSSDAP00000012428	ENSSDAP00000016886	ENSSDAP00000012428	ENSSDAP00000016886	annotation not available	annotation not available	0.900
ENSSDAP00000012428	ITGA6	ENSSDAP00000012428	ENSSDAP00000012716	annotation not available	Integrin subunit alpha 6.	0.928