STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RTF2Replication termination factor 2. (302 aa)    
Predicted Functional Partners:
TRMT1
tRNA methyltransferase 1.
    
   0.862
TRMT1L
tRNA methyltransferase 1 like.
    
 
 0.537
RTF1
RTF1 homolog, Paf1/RNA polymerase II complex component.
   
  
 0.511
TULP2
TUB like protein 2.
   
  
 0.506
ENSSDAP00000010214
annotation not available
      
 0.502
PKDREJ
Polycystin family receptor for egg jelly.
      
 0.502
ENSSDAP00000021260
annotation not available
      
 0.502
CATSPER1
Cation channel sperm associated 1.
      
 0.499
SMU1
SMU1 DNA replication regulator and spliceosomal factor.
      
 0.493
PRPF8
pre-mRNA processing factor 8.
    
 
 0.419
Your Current Organism:
Spermophilus dauricus
NCBI taxonomy Id: 99837
Other names: Citellus dauricus, Daurian ground squirrel, S. dauricus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.