Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FAM78BFamily with sequence similarity 78 member B. (261 aa)    
Predicted Functional Partners:
C12orf43
Chromosome 12 open reading frame 43.
      
 0.786
CPNE8
Copine 8.
   
 
 0.725
MEX3A
RING-type domain-containing protein.
    
 
 0.649
ACTBL2
Actin beta like 2.
      
 0.641
CCL27
Uncharacterized protein.
      
 0.475
UTP4
UTP4 small subunit processome component.
   
 0.444
WDR75
WD repeat domain 75.
   
  0.420
NRXN2
Neurexin 2.
   
  0.418
NRXN3
Neurexin 3.
   
  0.418
NRXN1
Neurexin 1.
   
  0.418
Your Current Organism:
Oryctolagus cuniculus
NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits
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