STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LMBR1Limb development membrane protein 1; Belongs to the LIMR family. (490 aa)    
Predicted Functional Partners:
LETMD1
LETM1 domain containing 1.
    
 
 0.792
PANK1
Pantothenate kinase 1.
      
 0.570
SHH
Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.
 
    
 0.534
STX16-NPEPL1
STX16-NPEPL1 readthrough (NMD candidate); Belongs to the syntaxin family.
      
 0.465
CCDC28B
Coiled-coil domain containing 28B.
      
 0.407
MCTP1
Multiple C2 and transmembrane domain containing 1.
      
 0.400
Your Current Organism:
Oryctolagus cuniculus
NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.