Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SMDT1Uncharacterized protein. (305 aa)    
Predicted Functional Partners:
MICU1
Mitochondrial calcium uptake 1.
    
 0.997
MCU
Mitochondrial calcium uniporter.
    
 0.996
MICU2
Mitochondrial calcium uptake 2.
    
 0.991
MCUB
Mitochondrial calcium uniporter dominant negative beta subunit.
    
 0.987
MICU3
Mitochondrial calcium uptake family member 3.
    
 0.983
SPG7
SPG7 matrix AAA peptidase subunit, paraplegin.
     
 0.832
AFG3L2
AFG3 like matrix AAA peptidase subunit 2.
     
 0.791
DCTN3
Dynactin subunit 3.
   
  
 0.729
NDUFB11
NADH:ubiquinone oxidoreductase subunit B11.
   
  
 0.728
PHB2
Prohibitin.
   
 
 0.728
Your Current Organism:
Oryctolagus cuniculus
NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits
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