STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CELF1CUGBP Elav-like family member 1. (512 aa)    
Predicted Functional Partners:
RALY
RALY heterogeneous nuclear ribonucleoprotein.
    
 
 0.958
MBNL1
Muscleblind like splicing regulator 1.
   
 
 0.937
MBNL3
Muscleblind like splicing regulator 3.
   
 
 0.857
CLCN1
Chloride channel protein.
      
 0.817
ENSOCUP00000012913
Oryctolagus cuniculus heterogeneous nuclear ribonucleoprotein C (HNRNPC), mRNA.
   
 
 0.799
MBNL2
Muscleblind like splicing regulator 2.
   
 
 0.797
HNRNPC
Heterogeneous nuclear ribonucleoprotein C; Binds pre-mRNA and nucleates the assembly of 40S hnRNP particles. Interacts with poly-U tracts in the 3'-UTR or 5'-UTR of mRNA and modulates the stability and the level of translation of bound mRNA molecules. Single HNRNPC tetramers bind 230-240 nucleotides. Trimers of HNRNPC tetramers bind 700 nucleotides. May play a role in the early steps of spliceosome assembly and pre-mRNA splicing. N6-methyladenosine (m6A) has been shown to alter the local structure in mRNAs and long non-coding RNAs (lncRNAs) via a mechanism named 'm(6)A-switch', facilit [...]
   
 
 0.795
RALYL
RALY RNA binding protein like.
    
 
 0.712
LOC100344160
RRM domain-containing protein.
   
 
 0.710
ENSOCUP00000040074
RRM domain-containing protein.
   
 
 0.710
Your Current Organism:
Oryctolagus cuniculus
NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits
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