Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VPS13AVacuolar protein sorting 13 homolog A. (3170 aa)    
Predicted Functional Partners:
VAPB
VAMP associated protein B and C.
    
 
 0.783
LGALS12
Galectin.
    
 
 0.710
ENSOCUP00000049020
MSP domain-containing protein.
    
 
 0.682
VPS13B
Vacuolar protein sorting 13 homolog B.
   
  
0.667
XKR9
XK-related protein.
      
 0.656
DBR1
Debranching RNA lariats 1.
    
   0.651
DCAF17
DDB1 and CUL4 associated factor 17.
   
  
 0.641
VPS35
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
   
 
 0.636
RAB31
MSP domain-containing protein.
    
 
 0.600
PDZD8
PDZ domain containing 8.
      
 0.598
Your Current Organism:
Oryctolagus cuniculus
NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits
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